Spectrum Atlas

phenanthridine+CH3 C14H11N

A2_14dee3bc02 · SMILES Cc1cccc2c1ncc1ccccc12 · InChIKey NNEKGIHCUCBTHT-UHFFFAOYSA-N

Cheap level done
finite-difference Hessian noisyfinite-difference Hessian noisy (analytic check differs > 15 cm⁻¹). The finite-difference Hessian and the analytic Hessian of the same geometry differ by more than 15 cm⁻¹ on at least one frequency; the numerical route is the noisy one.

Infrared spectrum at the cheap level (B3LYP/6-31G*, the pipeline's input)

500100015002000250030003500 3 µm4 µm5 µm6 µm8 µm10 µm15 µm 0.01.02.03.04.0 wavenumber (cm⁻¹) 500100015002000250030003500 3 µm4 µm5 µm6 µm8 µm10 µm15 µm 0.01.02.03.04.0 wavenumber (cm⁻¹) 100020003000 3 µm5 µm10 µm 0.01.02.03.04.0 wavenumber (cm⁻¹)
cheap input (B3LYP) bands
How to read this

57 infrared-active bands (500–3500 cm⁻¹); the strongest at 770 cm⁻¹ (13.0 µm), 65 km/mol.

cheap input (B3LYP): blue curve, sticks orange at the curve's peak scale. Lorentzian, FWHM 10 cm⁻¹; axis in km mol⁻¹ per cm⁻¹.

Band heights from the molecule's dipole derivatives and the same B3LYP Hessian as the listed positions (double harmonic).

Predicted spectrum (rung 3, the learned correction): computed by the pipeline, not drawn on this page; licensed for ring-ip, CH-stretch, CH-oop (decision 65).

How well is this shape known?
measured on (ΔH network v1.3)spectrum overlap
cheap → corrected
height error
cheap → corrected
8 unseen simple aromatics (layer A), DFT stand-in for the higher level0.28 → 0.980.23 → 0.10
31 molecules of unseen scaffolds, DFT stand-in for the higher level0.37 → 0.970.51 → 0.24
against coupled clusternot measured for this version

Overlap: similarity of the two broadened spectra (1 = the same shape). Height error: relative error per band, weighted by height (0 = the same heights). "Corrected" is the learned correction on molecules it never saw; the pipeline serves it for the licensed families. Open: the dipole derivatives themselves are computed at the cheap level (on benzene they differ from coupled cluster by about 20 %).

Harmonic frequencies at the cheap level (deck v1: B3LYP and ωB97X, 6-31G*, at the B3LYP geometry)

72 vibrational modes; imaginary modes negative. Shift = ωB97X − B3LYP; height = B3LYP band height (km/mol).

The B3LYP bands are drawn in the spectrum above; the table adds their heights, the ωB97X positions and the shift.

#B3LYP (cm⁻¹)height (km/mol)ωB97X (cm⁻¹)shift
173.90.4586.8+12.8
2101.80.74118.5+16.7
3125.80.38157.8+32.0
4196.40.52207.4+11.0
5216.61.11222.9+6.3
6242.10.01254.2+12.1
7264.22.59273.1+8.9
8310.90.49314.7+3.7
9422.00.03428.9+6.9
10423.80.24436.1+12.3
11466.80.02472.4+5.6
12484.80.70495.9+11.1
13509.40.73520.2+10.8
14521.66.58525.1+3.5
15539.10.97545.2+6.1
16588.02.92598.1+10.1
17596.82.45601.7+4.8
18616.61.83631.5+14.9
19679.90.57686.4+6.5
20731.57.97736.6+5.1
21745.30.27761.6+16.3
22770.365.15781.7+11.4
23781.114.02793.9+12.8
24830.30.56844.1+13.8
25836.90.49846.8+9.9
26880.10.43902.0+21.9
27893.91.87902.6+8.7
28901.62.66914.6+13.0
29903.111.54927.2+24.1
30942.52.36970.8+28.3
31960.62.63990.0+29.4
32973.13.771001.6+28.5
33991.80.071023.0+31.2
341023.91.471029.6+5.8
351062.22.071072.0+9.8
361078.52.881084.4+5.8
371097.00.861106.9+9.9
381117.03.851117.0+0.0
391166.64.441164.9-1.7
401196.90.671192.5-4.4
411212.61.701213.3+0.7
421222.82.101225.4+2.6
431266.90.981274.5+7.6
441281.115.901293.7+12.6
451300.51.111308.0+7.4
461330.01.041323.9-6.1
471378.04.851372.8-5.2
481394.25.171392.7-1.5
491425.60.411432.8+7.1
501439.82.281451.3+11.6
511446.60.581460.3+13.7
521489.35.321502.6+13.4
531505.25.221512.2+7.0
541509.33.141523.4+14.1
551521.522.331532.6+11.0
561538.210.761563.6+25.5
571580.517.981609.3+28.8
581631.00.261666.2+35.3
591646.021.621680.7+34.7
601660.87.821698.3+37.5
611673.313.771717.4+44.1
623057.530.593092.2+34.8
633115.712.913166.0+50.3
643130.225.783177.8+47.6
653133.026.613179.0+46.0
663180.27.863223.8+43.6
673181.45.053224.6+43.2
683190.313.593233.6+43.4
693195.228.543238.7+43.4
703206.35.683249.7+43.4
713211.330.283254.8+43.6
723222.226.543266.7+44.6

Second route

Analytic Hessian (pyscf, grid 99/590) against the corpus finite differences: b3lyp max |Δω| 1 cm⁻¹; wb97x max |Δω| 16 cm⁻¹.

Provenance

  • Releases: layerA2_2026-09-23, layerA2_2026-09-23b, layerA2_2026-09-24
  • Entered the corpus as: substituted three- and four-ring cores, enumerated from the parents (layer A′) (layer A2)
  • Run: ubuntu-32gb-hel1-11, 2026-09-21 00:44:52 → 2026-09-21 02:14:37, 5384 s, peak 5.77 GB, deck 97ed2d67c66b
  • Imaginary modes: B3LYP 0, ωB97X 0
  • Cheap-level band heights: dipole derivatives dipole_b3lyp_cphf.npz, Hessian hessian_b3lyp.npz
  • Source files: corpus factory · manifest